I3JG56_ORENI protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I3JG56_ORENI

Casein kinase 1 delta; Belongs to the protein kinase superfamily. (419 aa)

Predicted Functional Partners:

Ltv1

0.928

smo

0.906

GJA1

0.903

CSNK1D

0.900

grk3

0.900

bysl

0.856

riok2

0.855

tsr1

0.824

nob1

0.788

LOC100690808

0.759

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK1D	GJA1	ENSONIP00000028357	ENSONIP00000026265	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.903
CSNK1D	I3JG56_ORENI	ENSONIP00000028357	ENSONIP00000074135	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	0.900
CSNK1D	LOC100690808	ENSONIP00000028357	ENSONIP00000032872	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Period circadian clock 3.	0.759
CSNK1D	Ltv1	ENSONIP00000028357	ENSONIP00000072099	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	LTV1 ribosome biogenesis factor.	0.928
CSNK1D	bysl	ENSONIP00000028357	ENSONIP00000023841	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Bystin-like.	0.856
CSNK1D	grk3	ENSONIP00000028357	ENSONIP00000028943	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.900
CSNK1D	nob1	ENSONIP00000028357	ENSONIP00000034486	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.788
CSNK1D	riok2	ENSONIP00000028357	ENSONIP00000017227	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	RIO kinase 2 (yeast).	0.855
CSNK1D	smo	ENSONIP00000028357	ENSONIP00000014674	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.906
CSNK1D	tsr1	ENSONIP00000028357	ENSONIP00000016519	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	TSR1 ribosome maturation factor.	0.824
GJA1	CSNK1D	ENSONIP00000026265	ENSONIP00000028357	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	0.903
GJA1	I3JG56_ORENI	ENSONIP00000026265	ENSONIP00000074135	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	0.903
I3JG56_ORENI	CSNK1D	ENSONIP00000074135	ENSONIP00000028357	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	0.900
I3JG56_ORENI	GJA1	ENSONIP00000074135	ENSONIP00000026265	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.903
I3JG56_ORENI	LOC100690808	ENSONIP00000074135	ENSONIP00000032872	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Period circadian clock 3.	0.759
I3JG56_ORENI	Ltv1	ENSONIP00000074135	ENSONIP00000072099	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	LTV1 ribosome biogenesis factor.	0.928
I3JG56_ORENI	bysl	ENSONIP00000074135	ENSONIP00000023841	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	Bystin-like.	0.856
I3JG56_ORENI	grk3	ENSONIP00000074135	ENSONIP00000028943	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.900
I3JG56_ORENI	nob1	ENSONIP00000074135	ENSONIP00000034486	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.788
I3JG56_ORENI	riok2	ENSONIP00000074135	ENSONIP00000017227	Casein kinase 1 delta; Belongs to the protein kinase superfamily.	RIO kinase 2 (yeast).	0.855