STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIGNL2Fidgetin like 2. (687 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.949
I3J4H0_ORENI
IST1 factor associated with ESCRT-III.
    
 0.852
chmp3
Charged multivesicular body protein 3.
   
 0.809
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.761
ubxn1
UBX domain protein 1.
   
 0.713
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.704
faap100
Si:dkey-57h18.1.
    
 0.704
LOC100700586
Ataxin 3.
   
 0.656
chmp7
Charged multivesicular body protein 7.
   
 
 0.652
chmp2a
Charged multivesicular body protein 2A.
    
 0.629
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.