STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3IWI9_ORENINerve growth factor receptor a (TNFR superfamily, member 16). (427 aa)    
Predicted Functional Partners:
LOC100692989
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 0.998
ntf3
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
    
 0.991
LOC100696124
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
     
  0.936
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.929
LOC102081035
Neurotrophin 4; Belongs to the NGF-beta family.
    
 0.928
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
    
 0.914
LOC100712491
Neurotrophin receptor associated death domain.
  
  
 
0.910
LOC100691074
Nerve growth factor receptor b.
  
 
 
0.907
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.866
tradd
Tnfrsf1a-associated via death domain.
    
 
 0.851
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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