STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgnRegucalcin. (297 aa)    
Predicted Functional Partners:
idnk
Gluconokinase; Belongs to the gluconokinase GntK/GntV family.
    
 0.993
chdh
Choline dehydrogenase.
  
 
 0.920
Ift46
Intraflagellar transport 46 homolog (Chlamydomonas).
  
 
 0.920
LOC100712286
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.
   
 
 0.917
park7
Parkinson protein 7.
  
 
 0.891
sord
Sorbitol dehydrogenase.
  
 
 0.866
xylb
Xylulokinase homolog (H. influenzae).
  
 
 0.768
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
  
  
 0.764
LOC100711398
Glucose-fructose oxidoreductase domain containing 1.
  
 
 0.667
Gfod2
Glucose-fructose oxidoreductase domain containing 2.
  
 
 0.667
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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