STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbx7Chromobox homolog 7b. (260 aa)    
Predicted Functional Partners:
RING1
RING-type domain-containing protein.
    
 0.823
rnf2
Ring finger protein 2.
    
 0.823
Bmi1
Bmi1 polycomb ring finger oncogene 1a.
    
 0.719
pcgf2
RING-type domain-containing protein.
    
 0.719
phc3
Uncharacterized protein.
    
 0.706
eed
Embryonic ectoderm development.
    
 0.669
pcgf1
Polycomb group ring finger 1.
    
 0.583
pcgf6
Polycomb group RING finger protein 6.
    
 0.583
LOC100699992
Uncharacterized protein.
      
 0.581
PCGF3
Polycomb group ring finger 3.
    
 0.576
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.