ndufb4 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ndufb4

NADH:ubiquinone oxidoreductase subunit B4. (108 aa)

Predicted Functional Partners:

ndufb5

0.999

ndufs3

0.999

ndufb9

0.999

ndufs6

0.999

NDUFA13

0.999

ndufa5

0.999

ndufab1

0.999

ndufb10

0.999

ndufa12

0.999

ndufa8

0.999

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NDUFA13	ndufa12	ENSONIP00000012786	ENSONIP00000022500	NADH:ubiquinone oxidoreductase subunit A13.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
NDUFA13	ndufa5	ENSONIP00000012786	ENSONIP00000017844	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit A5.	0.999
NDUFA13	ndufa8	ENSONIP00000012786	ENSONIP00000029074	NADH:ubiquinone oxidoreductase subunit A13.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
NDUFA13	ndufab1	ENSONIP00000012786	ENSONIP00000019756	NADH:ubiquinone oxidoreductase subunit A13.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
NDUFA13	ndufb10	ENSONIP00000012786	ENSONIP00000021715	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit B10.	0.999
NDUFA13	ndufb4	ENSONIP00000012786	ENSONIP00000078328	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit B4.	0.999
NDUFA13	ndufb5	ENSONIP00000012786	ENSONIP00000002113	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit B5.	0.999
NDUFA13	ndufb9	ENSONIP00000012786	ENSONIP00000009114	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit B9; Belongs to the complex I LYR family.	0.999
NDUFA13	ndufs3	ENSONIP00000012786	ENSONIP00000008776	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.999
NDUFA13	ndufs6	ENSONIP00000012786	ENSONIP00000009760	NADH:ubiquinone oxidoreductase subunit A13.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
ndufa12	NDUFA13	ENSONIP00000022500	ENSONIP00000012786	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit A13.	0.999
ndufa12	ndufa5	ENSONIP00000022500	ENSONIP00000017844	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit A5.	0.999
ndufa12	ndufa8	ENSONIP00000022500	ENSONIP00000029074	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
ndufa12	ndufab1	ENSONIP00000022500	ENSONIP00000019756	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
ndufa12	ndufb10	ENSONIP00000022500	ENSONIP00000021715	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B10.	0.999
ndufa12	ndufb4	ENSONIP00000022500	ENSONIP00000078328	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B4.	0.999
ndufa12	ndufb5	ENSONIP00000022500	ENSONIP00000002113	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B5.	0.999
ndufa12	ndufb9	ENSONIP00000022500	ENSONIP00000009114	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase subunit B9; Belongs to the complex I LYR family.	0.999
ndufa12	ndufs3	ENSONIP00000022500	ENSONIP00000008776	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.999
ndufa12	ndufs6	ENSONIP00000022500	ENSONIP00000009760	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999