STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrrc6Leucine rich repeat containing 6. (486 aa)    
Predicted Functional Partners:
zmynd10
Zinc finger, MYND-type containing 10.
    
 0.739
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
  
 
 
 0.705
I3JR68_ORENI
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.661
dnai2
Dynein, axonemal, intermediate chain 2b.
    
 
 0.639
ccdc39
Uncharacterized protein.
   
 0.630
ppp3r1
WD repeat-containing protein 92.
    
 0.606
LOC100707731
Radial spoke head component 4A.
   
  
 0.606
dnaaf3
Dynein, axonemal, assembly factor 3 like.
      
 0.604
ccdc40
Coiled-coil domain containing 40.
   
 
 0.600
armc4
Armadillo repeat containing 4.
   
 
 0.595
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.