STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tm9sf4Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (646 aa)    
Predicted Functional Partners:
eef1aknmt
Methyltransferase like 13.
      
 0.767
hck
Tyrosine-protein kinase.
    
 
 0.717
plagl2
Pleiomorphic adenoma gene-like 2.
   
 
 0.710
LOC100705997
Transmembrane p24 trafficking protein 5.
      
 0.709
sec24c
SEC24 homolog C, COPII coat complex component.
   
    0.605
tmed10
Transmembrane p24 trafficking protein 10.
   
  
 0.584
IER5L
Immediate early response 5 like.
      
 0.507
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
   
  
 0.506
I3JT44_ORENI
Uncharacterized protein.
      
 0.504
vps54
VPS54 subunit of GARP complex.
      
 0.472
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.