STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH20Cadherin 20; Cadherins are calcium-dependent cell adhesion proteins. (853 aa)    
Predicted Functional Partners:
cep162
Centrosomal protein 162.
      
 0.624
LOC100697378
Sine oculis binding protein homolog (Drosophila) b.
      
 0.584
NT5E
5'-nucleotidase, ecto (CD73); Belongs to the 5'-nucleotidase family.
    
 
 0.582
I3KR69_ORENI
5'-nucleotidase ecto; Belongs to the 5'-nucleotidase family.
    
 
 0.582
LOC100702161
T-box transcription factor 18.
      
 0.581
LOC100691569
Cytochrome b5 reductase 4.
    
 0.576
rnf152
Ring finger protein 152.
      
 0.542
I3JHG0_ORENI
Drosha ribonuclease III.
    
 
 0.506
ENSONIP00000054791
Ripply transcriptional repressor 2.
      
 0.498
I3KBK4_ORENI
Uncharacterized protein.
      
 0.485
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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