STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_0726Hypothetical protein; ABC transporter substrate-binding protein. (331 aa)    
Predicted Functional Partners:
B4119_0727
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
    0.984
B4119_1550
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
    0.958
B4119_0728
Hypothetical protein; Methionine ABC transporter ATP-binding protein.
 
    0.917
B4119_1549
Hypothetical protein; Methionine ABC transporter ATP-binding protein.
 
    0.804
B4119_3831
Hypothetical protein; Two-component sensor histidine kinase.
    
  0.787
B4119_1398
Hypothetical protein; Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
    
  0.741
B4119_1061
Flagellar motor switch protein FliN.
   
 
  0.728
B4119_2324
Hypothetical protein; Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
  
 
  0.599
B4119_1256
Chemotaxis protein CheV.
    
  0.528
B4119_1257
Chemotaxis protein CheV.
    
  0.528
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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