STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_0933Ethanolamine utilization protein similar to PduL. (70 aa)    
Predicted Functional Partners:
B4119_1889
Pyruvate:ferredoxin oxidoreductase, alpha subunit / Pyruvate:ferredoxin oxidoreductase, beta subunit.
 
  
  0.814
B4119_1891
Pyruvate:ferredoxin oxidoreductase, gamma subunit / Pyruvate:ferredoxin oxidoreductase, delta subunit.
 
  
  0.807
B4119_0991
2-oxoglutarate oxidoreductase, alpha subunit.
    
  0.802
B4119_1890
Pyruvate:ferredoxin oxidoreductase, alpha subunit / Pyruvate:ferredoxin oxidoreductase, beta subunit.
    
  0.790
B4119_0934
Hypothetical protein; Transcriptional regulator, MarR family.
       0.773
B4119_0935
Hypothetical protein.
       0.773
B4119_4242
Hypothetical protein; Acetaldehyde dehydrogenase, ethanolamine utilization cluster.
 
  
 0.627
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
    
 0.584
B4119_4247
Hypothetical protein.
 
   
 0.540
B4119_3746
Pyruvate formate-lyase.
    
 0.534
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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