STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_1215FIG00672596: hypothetical protein. (66 aa)    
Predicted Functional Partners:
B4119_3237
FIG00673611: hypothetical protein.
  
     0.735
B4119_3227
Uncharacterized SAV1743 -like protein; Belongs to the UPF0354 family.
  
     0.730
B4119_3242
Hypothetical protein; Transcriptional regulator, DeoR family.
  
     0.712
B4119_1069
Flagellar protein FliJ.
  
     0.709
B4119_3010
TPR repeat protein.
  
     0.682
B4119_2795
Hypothetical protein perhaps functionally coupled to transcription elongation factor GreA.
  
     0.677
B4119_1044
Hypothetical protein.
  
     0.651
B4119_3849
ATP synthase protein I.
  
     0.647
B4119_2511
Late competence protein ComGD, access of DNA to ComEA, FIG012777.
  
     0.644
B4119_0894
FIG00672772: hypothetical protein.
  
     0.640
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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