STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_1309Hypothetical protein. (460 aa)    
Predicted Functional Partners:
B4119_2062
Transposase IS200-like protein.
 
    0.688
B4119_1433
Mobile element protein.
  
     0.671
B4119_1608
Mobile element protein.
  
     0.667
B4119_2011
Hypothetical protein; Transposase, IS605 OrfB family.
  
     0.636
B4119_0619
Mobile element protein.
  
     0.489
B4119_3744
Mobile element protein.
  
     0.489
B4119_1308
FIG00673126: hypothetical protein.
       0.480
B4119_3699
Mobile element protein.
  
     0.471
B4119_3409
Mobile element protein.
  
     0.462
B4119_1310
Hypothetical protein; ATP-dependent Clp protease-like; Belongs to the ClpA/ClpB family.
       0.413
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.