STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_1373Protein containing an Alanine Racemase Domain. (387 aa)    
Predicted Functional Partners:
B4119_1376
Hypothetical protein; FIG006427: Putative transport system permease protein.
 
  
 0.959
B4119_1372
Phosphopentomutase like.
 
  
 0.956
B4119_1374
Hypothetical protein; Aspartate aminotransferase family.
 
     0.954
PHP
Phosphotriesterase like protein.
 
    0.949
B4119_1377
FIG128630: Hypothetical protein.
 
     0.940
B4119_1379
Hypothetical protein.
 
     0.882
B4119_1378
Hypothetical protein.
       0.742
B4119_2356
Phosphotriesterase family protein; Belongs to the metallo-dependent hydrolases superfamily. Phosphotriesterase family.
 
    0.742
B4119_2171
Parathion hydrolase.
 
    0.619
B4119_0837
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
  0.584
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.