STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_1629Hypothetical protein; Transcriptional regulator KdgR, KDG operon repressor. (258 aa)    
Predicted Functional Partners:
B4119_1696
Urea carboxylase.
  
 
  0.951
B4119_2159
Allophanate hydrolase 2 subunit 1.
  
    0.700
B4119_2160
Allophanate hydrolase 2 subunit 2.
  
    0.699
B4119_1630
Hypothetical protein; Fumarylacetoacetate hydrolase family protein.
 
     0.635
B4119_1625
Hypothetical protein; TRAP-type C4-dicarboxylate transport system, large permease component.
 
  
  0.518
B4119_1638
Altronate hydrolase.
 
  
 0.510
B4119_1627
Iron-sulfur cluster binding protein.
 
     0.468
B4119_1741
Hypothetical protein; Transcriptional regulator, GntR family.
  
  
 0.465
B4119_1641
4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase.
 
   
 0.461
B4119_1628
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
  
 0.457
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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