STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_1823Hypothetical protein DUF194, DegV family. (280 aa)    
Predicted Functional Partners:
B4119_1111
Dihydroxyacetone kinase family protein.
 
 0.995
B4119_1822
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone.
       0.695
B4119_1820
Hypothetical protein; YfaA.
  
  
 0.587
B4119_1824
Hypothetical protein.
       0.579
B4119_1112
Hypothetical protein; FIG001802: Putative alkaline-shock protein.
 
    0.539
B4119_1821
Hypothetical protein; FIG006988: Lipase/Acylhydrolase with GDSL-like motif.
     
 0.528
rex
Hypothetical protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.419
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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