STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_1938Alcohol dehydrogenase. (393 aa)    
Predicted Functional Partners:
B4119_4242
Hypothetical protein; Acetaldehyde dehydrogenase, ethanolamine utilization cluster.
 
 0.961
B4119_3183
Alcohol dehydrogenase.
   
 0.848
B4119_1939
Hypothetical protein; N-acyl homoserine lactone hydrolase.
 
   0.803
B4119_1889
Pyruvate:ferredoxin oxidoreductase, alpha subunit / Pyruvate:ferredoxin oxidoreductase, beta subunit.
  
 
 0.769
B4119_1890
Pyruvate:ferredoxin oxidoreductase, alpha subunit / Pyruvate:ferredoxin oxidoreductase, beta subunit.
  
 
 0.769
B4119_0991
2-oxoglutarate oxidoreductase, alpha subunit.
  
 
 0.764
B4119_1891
Pyruvate:ferredoxin oxidoreductase, gamma subunit / Pyruvate:ferredoxin oxidoreductase, delta subunit.
  
 
 0.763
B4119_0492
Glutamate synthase [NADPH] large chain.
   
 
 0.742
B4119_1489
Glutamate synthase [NADPH] large chain.
   
 
 0.742
B4119_1940
Succinate-semialdehyde dehydrogenase [NADP+].
 
 
  0.720
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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