Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B4119_0187 | B4119_1967 | B4119_0187 | B4119_1967 | FIG00672583: hypothetical protein. | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | 0.677 |
B4119_0631 | B4119_1967 | B4119_0631 | B4119_1967 | Hypothetical protein. | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | 0.641 |
B4119_1966 | B4119_1967 | B4119_1966 | B4119_1967 | Hypothetical protein. | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | 0.805 |
B4119_1967 | B4119_0187 | B4119_1967 | B4119_0187 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | FIG00672583: hypothetical protein. | 0.677 |
B4119_1967 | B4119_0631 | B4119_1967 | B4119_0631 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | Hypothetical protein. | 0.641 |
B4119_1967 | B4119_1966 | B4119_1967 | B4119_1966 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | Hypothetical protein. | 0.805 |
B4119_1967 | B4119_2745 | B4119_1967 | B4119_2745 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | Chemotaxis protein methyltransferase CheR. | 0.849 |
B4119_1967 | B4119_2874 | B4119_1967 | B4119_2874 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | FIG00674272: hypothetical protein. | 0.526 |
B4119_1967 | B4119_4300 | B4119_1967 | B4119_4300 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | Hypothetical protein; Transcriptional regulator, PadR family. | 0.526 |
B4119_1967 | rpoA | B4119_1967 | B4119_0146 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.698 |
B4119_1967 | rpoB | B4119_1967 | B4119_0112 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.862 |
B4119_1967 | rpoC | B4119_1967 | B4119_0113 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.862 |
B4119_1967 | rpoZ | B4119_1967 | B4119_1125 | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.696 |
B4119_2745 | B4119_1967 | B4119_2745 | B4119_1967 | Chemotaxis protein methyltransferase CheR. | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | 0.849 |
B4119_2874 | B4119_1967 | B4119_2874 | B4119_1967 | FIG00674272: hypothetical protein. | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | 0.526 |
B4119_4300 | B4119_1967 | B4119_4300 | B4119_1967 | Hypothetical protein; Transcriptional regulator, PadR family. | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | 0.526 |
rpoA | B4119_1967 | B4119_0146 | B4119_1967 | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein; DNA-directed RNA polymerase ECF-type sigma factor. | 0.698 |
rpoA | rpoB | B4119_0146 | B4119_0112 | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoC | B4119_0146 | B4119_0113 | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpoA | rpoZ | B4119_0146 | B4119_1125 | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
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