STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_2132ABC transporter, ATP-binding protein. (303 aa)    
Predicted Functional Partners:
B4119_2130
ABC transporter protein, putative.
 
 
 0.950
B4119_2131
Hypothetical protein; Permease.
 
 
 0.944
B4119_2133
Hypothetical protein; Sensor histidine kinase.
 
  
  0.800
B4119_2114
ABC transporter, permease protein.
  
 0.715
B4119_2954
Hypothetical protein; Putative permease YhcI.
  
 0.715
B4119_2134
Hypothetical protein; DNA-binding response regulator.
 
     0.701
B4119_0922
ABC transporter, permease protein.
 
 0.653
B4119_2129
Hypothetical protein.
       0.639
B4119_3361
Hypothetical protein; Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1).
 
   
 
0.581
atpD
ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.512
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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