STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_2699Hypothetical protein; CAAX amino terminal protease family protein. (200 aa)    
Predicted Functional Partners:
B4119_2700
FIG00674717: hypothetical protein.
       0.807
B4119_2698
Hypothetical protein; ATP-dependent DNA helicase, RecQ family.
  
    0.764
B4119_2697
FIG00743178: hypothetical protein.
       0.760
B4119_0380
FIG01226916: hypothetical protein.
  
  
 0.711
B4119_0381
FIG01225897: hypothetical protein.
  
  
 0.711
B4119_0750
Protein GerPB, required for proper assembly of spore coat, mutations lead to super-dormant spore.
  
     0.662
B4119_0270
FIG00674313: hypothetical protein.
 
     0.652
B4119_0922
ABC transporter, permease protein.
   
  
 0.616
B4119_2252
FIG00673160: hypothetical protein.
  
     0.614
B4119_2701
FIG00673398: hypothetical protein.
       0.601
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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