STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_2858FIG00673048: hypothetical protein. (179 aa)    
Predicted Functional Partners:
B4119_2715
Hypothetical protein.
  
     0.744
B4119_1087
Hypothetical protein.
  
     0.724
B4119_1044
Hypothetical protein.
  
     0.707
B4119_1059
Flagellar biosynthesis protein FliZ.
  
     0.704
sigA
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.601
B4119_3237
FIG00673611: hypothetical protein.
  
     0.571
B4119_3322
FIG00673229: hypothetical protein.
  
     0.569
B4119_2859
Hypothetical protein; Membrane-attached cytochrome c550.
       0.563
B4119_3044
Hypothetical protein; Type IV pilin PilA.
  
     0.555
B4119_0847
FIG00673973: hypothetical protein.
  
     0.543
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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