STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4119_3638Membrane protein, putative. (419 aa)    
Predicted Functional Partners:
B4119_3636
FIG00674309: hypothetical protein.
 
     0.942
B4119_3637
Hypothetical protein; Putative small multidrug resistance transmembrane protein.
 
  
 0.930
B4119_3635
Hypothetical protein; Glycosyltransferase involved in cell wall biogenesis.
 
 
 0.886
B4119_3030
FIG00673118: hypothetical protein.
 
     0.722
B4119_2421
FIG00674223: hypothetical protein.
  
     0.699
B4119_1503
Hypothetical protein.
  
     0.697
B4119_2030
FIG00674217: hypothetical protein.
  
     0.694
B4119_2985
FIG00673992: hypothetical protein.
  
     0.687
B4119_0635
FIG00674307: hypothetical protein.
  
     0.667
B4119_4060
Hypothetical protein; Permease, putative.
  
     0.650
Your Current Organism:
Parageobacillus caldoxylosilyticus
NCBI taxonomy Id: 81408
Other names: ATCC 700356, Bacillus sp. BGSC W9A59, Bacillus sp. BGSC W9A68, DSM 12041, Geobacillus caldoxylosilyticus, Geobacillus caldoxylosilyticus (Ahmad et al. 2000) Fortina et al. 2001, NBRC 107762, P. caldoxylosilyticus, Saccharococcus caldoxylosilyticus, Saccharococcus caldoxylosilyticus Ahmad et al. 2000, strain S1812
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