Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SDZ89023.1DNA-binding transcriptional regulator LsrR, DeoR family. (317 aa)    
Predicted Functional Partners:
SEA28545.1
DNA-binding transcriptional regulator LsrR, DeoR family.
  
     0.774
SEA72033.1
Central glycolytic genes regulator.
  
     0.572
SDZ89048.1
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
    
  0.547
xylB
Xylulokinase.
 
    0.540
SDZ89088.1
Haloacid Dehalogenase Superfamily Class (subfamily) IIA.
       0.466
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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