SDZ89225.1 protein (Eubacterium aggregans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SDZ89225.1

4Fe-4S binding domain-containing protein. (186 aa)

Predicted Functional Partners:

SEA47942.1

0.996

SEA25416.1

0.992

rnfA

0.989

rnfC

0.989

rnfG

0.987

SEA26341.1

0.986

rnfD

0.984

rnfE

0.983

SEA47919.1

0.983

SEA35850.1

0.974

Your Current Organism:

Eubacterium aggregans

NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDZ89225.1	SEA25416.1	SAMN04515656_10125	SAMN04515656_10674	4Fe-4S binding domain-containing protein.	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	0.992
SDZ89225.1	SEA26341.1	SAMN04515656_10125	SAMN04515656_106108	4Fe-4S binding domain-containing protein.	NAD(P)-dependent iron-only hydrogenase catalytic subunit.	0.986
SDZ89225.1	SEA35850.1	SAMN04515656_10125	SAMN04515656_10894	4Fe-4S binding domain-containing protein.	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit.	0.974
SDZ89225.1	SEA47919.1	SAMN04515656_10125	SAMN04515656_11196	4Fe-4S binding domain-containing protein.	4Fe-4S dicluster domain-containing protein.	0.983
SDZ89225.1	SEA47942.1	SAMN04515656_10125	SAMN04515656_11197	4Fe-4S binding domain-containing protein.	NADH-quinone oxidoreductase subunit F.	0.996
SDZ89225.1	rnfA	SAMN04515656_10125	SAMN04515656_10640	4Fe-4S binding domain-containing protein.	Electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.989
SDZ89225.1	rnfC	SAMN04515656_10125	SAMN04515656_10644	4Fe-4S binding domain-containing protein.	Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.989
SDZ89225.1	rnfD	SAMN04515656_10125	SAMN04515656_10643	4Fe-4S binding domain-containing protein.	Electron transport complex protein RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.984
SDZ89225.1	rnfE	SAMN04515656_10125	SAMN04515656_10641	4Fe-4S binding domain-containing protein.	Electron transport complex protein RnfE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.983
SDZ89225.1	rnfG	SAMN04515656_10125	SAMN04515656_10642	4Fe-4S binding domain-containing protein.	Electron transport complex protein RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.987
SEA25416.1	SDZ89225.1	SAMN04515656_10674	SAMN04515656_10125	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	4Fe-4S binding domain-containing protein.	0.992
SEA25416.1	SEA26341.1	SAMN04515656_10674	SAMN04515656_106108	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	NAD(P)-dependent iron-only hydrogenase catalytic subunit.	0.929
SEA25416.1	SEA35850.1	SAMN04515656_10674	SAMN04515656_10894	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit.	0.907
SEA25416.1	SEA47919.1	SAMN04515656_10674	SAMN04515656_11196	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	4Fe-4S dicluster domain-containing protein.	0.922
SEA25416.1	SEA47942.1	SAMN04515656_10674	SAMN04515656_11197	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	NADH-quinone oxidoreductase subunit F.	0.970
SEA25416.1	rnfA	SAMN04515656_10674	SAMN04515656_10640	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.696
SEA25416.1	rnfC	SAMN04515656_10674	SAMN04515656_10644	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.907
SEA25416.1	rnfD	SAMN04515656_10674	SAMN04515656_10643	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Electron transport complex protein RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.666
SEA25416.1	rnfE	SAMN04515656_10674	SAMN04515656_10641	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Electron transport complex protein RnfE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.700
SEA25416.1	rnfG	SAMN04515656_10674	SAMN04515656_10642	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Electron transport complex protein RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.694