Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SDZ89498.1Transcriptional regulator, RpiR family. (252 aa)    
Predicted Functional Partners:
SDZ89462.1
PTS system maltose-specific IIB component, Glc family /PTS system maltose-specific IIC component, Glc family.
 
 
 0.920
SEA83275.1
PTS system IIA component, Glc family /PTS system IIB component, Glc family /PTS system IIC component, Glc family.
 
 
 0.915
SDZ89356.1
PTS system IIA component, Glc family.
 
 
 0.911
SDZ89432.1
Maltose-6'-phosphate glucosidase.
 
 
 0.898
SDZ89527.1
Transcriptional regulator, RpiR family.
 
    
0.820
SEA25416.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.773
SDZ91658.1
PTS system, sucrose-specific IIC component.
 
 
 0.729
SEA21374.1
DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains.
  
     0.560
SDZ89547.1
Hypothetical protein.
       0.501
SEA59512.1
PTS system, N-acetylgalactosamine-specific IIA component.
 
  
 0.473
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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