Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA01136.1Uncharacterized membrane protein. (298 aa)    
Predicted Functional Partners:
SEA23643.1
Putative ABC-transporter type IV.
 
    
0.848
SEA01106.1
Protein of unknown function.
 
     0.804
SEA01161.1
Exonuclease.
       0.773
SEA00855.1
Uncharacterized protein.
     0.740
SEA08854.1
CoA-substrate-specific enzyme activase, putative.
 
     0.583
SEA01188.1
Hypothetical protein.
       0.536
SEA01225.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
       0.457
SEA01246.1
tRNA threonylcarbamoyl adenosine modification protein YeaZ.
       0.457
SEA01286.1
[SSU ribosomal protein S18P]-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.457
SEA01316.1
Integral membrane protein TIGR01906.
       0.457
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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