Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA01544.1Aminopeptidase P Metallo peptidase. MEROPS family M24B. (401 aa)    
Predicted Functional Partners:
SEA79099.1
IMP dehydrogenase.
   
   0.789
SEA56320.1
dCMP deaminase.
  
  
 0.762
SEA72213.1
Hypothetical protein.
   
 
 0.740
SEA01486.1
Uncharacterized membrane protein.
       0.700
SEA01516.1
Hypothetical protein.
       0.689
SEA56055.1
Acyl-CoA dehydrogenase.
  
 0.630
SEA25416.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.600
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
 
  0.587
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
   0.585
SEA81458.1
Sarcosine oxidase subunit beta.
  
 
 0.585
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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