Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SDZ98875.1GntR family transcriptional regulator. (234 aa)    
Predicted Functional Partners:
SDZ98809.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.806
SDZ98837.1
Methanogenic corrinoid protein MtbC1.
       0.781
SEA25416.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.736
SEA18311.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
  
  
 0.669
SDZ98961.1
Protein of unknown function.
 
     0.499
thyX
Thymidylate synthase (FAD); Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
       0.491
SEA21433.1
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.487
SDZ98689.1
Imidazolonepropionase.
 
 
 0.479
SDZ89356.1
PTS system IIA component, Glc family.
  
  
 0.450
SEA83275.1
PTS system IIA component, Glc family /PTS system IIB component, Glc family /PTS system IIC component, Glc family.
  
  
 0.450
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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