Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SDZ99094.1Ni-dependent carbon monoxide dehydrogenase precursor. (635 aa)    
Predicted Functional Partners:
SDZ99156.1
acetyl-CoA decarbonylase/synthase beta subunit.
 
 
 0.998
SDZ98989.1
acetyl-CoA decarbonylase/synthase delta subunit.
 
 0.985
SDZ99024.1
CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein large subunit precursor.
 
 
 0.981
SDZ99127.1
CO dehydrogenase maturation factor.
 
   
 0.949
SDZ99062.1
Methyltetrahydrofolate--corrinoid iron-sulfur protein Co-methyltransferase.
 
  
 0.879
SEA25416.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.871
SEA81957.1
Formylmethanofuran dehydrogenase subunit E.
  
  
  0.860
SEA47942.1
NADH-quinone oxidoreductase subunit F.
   
 0.847
SDZ98901.1
CO dehydrogenase maturation factor.
 
   
 0.842
SDZ98961.1
Protein of unknown function.
 
     0.816
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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