Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDZ99327.1AAA domain (dynein-related subfamily). (305 aa)    
Predicted Functional Partners:
SDZ99296.1
Hypothetical protein.
 
 
 0.989
SEA20255.1
Hypothetical protein.
  
 
 0.853
SDZ99181.1
Hypothetical protein.
 
     0.693
SDZ99211.1
Predicted RNA-binding protein.
 
     0.692
SDZ99359.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.670
SEA54121.1
Arginine/lysine/ornithine decarboxylase.
   
 
 0.657
SDZ99241.1
Protein of unknown function.
       0.611
SDZ99272.1
Hypothetical protein.
       0.611
SEA40597.1
Fibro-slime domain-containing protein.
  
 
 0.574
SEA09443.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
    0.568
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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