Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEA08006.1Hypothetical protein. (407 aa)    
Predicted Functional Partners:
SEA08105.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.877
SEA79973.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.877
SEA07976.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.838
SEA07944.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
 
 0.821
SEA08135.1
O-antigen ligase.
  
 
 0.811
SEA66846.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
   
 0.784
SEA08047.1
Glycosyl transferases group 1.
       0.773
SEA07891.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.767
SEA08196.1
Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein).
 
     0.761
SEA07918.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.759
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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