der protein (Eubacterium aggregans) - STRING interaction network

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der

GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (441 aa)

Predicted Functional Partners:

cmk

0.986

rplA

0.928

SEA02780.1

0.898

SEA09265.1

0.893

SEA00055.1

0.890

rplT

0.853

rplS

0.837

rplU

0.836

rpmF

0.824

rpmA

0.821

Your Current Organism:

Eubacterium aggregans

NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEA00055.1	cmk	SAMN04515656_102108	SAMN04515656_102113	23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.	Cytidylate kinase.	0.989
SEA00055.1	der	SAMN04515656_102108	SAMN04515656_103162	23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.890
SEA00055.1	rplT	SAMN04515656_102108	SAMN04515656_1332	23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.487
SEA00055.1	rplU	SAMN04515656_102108	SAMN04515656_12233	23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.519
SEA02780.1	der	SAMN04515656_102208	SAMN04515656_103162	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.898
SEA02780.1	rplA	SAMN04515656_102208	SAMN04515656_1388	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.813
SEA02780.1	rplS	SAMN04515656_102208	SAMN04515656_102206	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.878
SEA02780.1	rplT	SAMN04515656_102208	SAMN04515656_1332	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.789
SEA02780.1	rplU	SAMN04515656_102208	SAMN04515656_12233	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.829
SEA02780.1	rpmA	SAMN04515656_102208	SAMN04515656_12231	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.775
SEA02780.1	rpmF	SAMN04515656_102208	SAMN04515656_102190	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.792
SEA09265.1	der	SAMN04515656_103161	SAMN04515656_103162	Putative radical SAM enzyme, TIGR03279 family.	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.893
cmk	SEA00055.1	SAMN04515656_102113	SAMN04515656_102108	Cytidylate kinase.	23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.	0.989
cmk	der	SAMN04515656_102113	SAMN04515656_103162	Cytidylate kinase.	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.986
der	SEA00055.1	SAMN04515656_103162	SAMN04515656_102108	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.	0.890
der	SEA02780.1	SAMN04515656_103162	SAMN04515656_102208	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.898
der	SEA09265.1	SAMN04515656_103162	SAMN04515656_103161	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Putative radical SAM enzyme, TIGR03279 family.	0.893
der	cmk	SAMN04515656_103162	SAMN04515656_102113	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Cytidylate kinase.	0.986
der	rplA	SAMN04515656_103162	SAMN04515656_1388	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.928
der	rplS	SAMN04515656_103162	SAMN04515656_102206	GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.837

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