Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA05551.1Hypothetical protein. (72 aa)    
Predicted Functional Partners:
SEA05342.1
Hypothetical protein.
       0.773
SEA05373.1
Helicase conserved C-terminal domain-containing protein.
       0.773
SEA05400.1
DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
       0.773
SEA05432.1
Hypothetical protein.
       0.773
SEA05463.1
Hypothetical protein.
       0.773
SEA05489.1
Hypothetical protein.
       0.773
SEA05520.1
Putative DNA primase/helicase.
       0.773
SEA05578.1
Hypothetical protein.
       0.773
SEA05604.1
Hypothetical protein.
       0.773
SEA05069.1
Hypothetical protein.
       0.718
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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