Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA05952.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
SEA05922.1
Hypothetical protein.
       0.824
SEA05981.1
Hypothetical protein.
       0.824
SEA06008.1
Hypothetical protein.
       0.824
SEA06043.1
Hypothetical protein.
       0.816
SEA06095.1
Bacteriophage Gp15 protein.
       0.787
SEA05861.1
Hypothetical protein.
       0.785
SEA05889.1
Hypothetical protein.
       0.760
SEA06128.1
Hypothetical protein.
       0.752
SEA06151.1
Hypothetical protein.
       0.747
SEA06068.1
Hypothetical protein.
       0.726
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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