Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA04997.1Regulatory protein, Fis family. (65 aa)    
Predicted Functional Partners:
SEA05069.1
Hypothetical protein.
       0.664
SEA05094.1
Hypothetical protein.
       0.664
SEA05118.1
Helicase conserved C-terminal domain-containing protein.
       0.664
SEA05138.1
Hypothetical protein.
       0.664
SEA05162.1
Hypothetical protein.
       0.664
SEA05199.1
Hypothetical protein.
       0.664
SEA05228.1
Hypothetical protein.
       0.664
SEA05261.1
Holliday junction resolvase (hjc).
       0.664
SEA05285.1
Hypothetical protein.
       0.664
SEA05315.1
Phage nucleotide-binding protein.
       0.664
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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