Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA15624.1Phage terminase large subunit. (423 aa)    
Predicted Functional Partners:
SEA15595.1
Phage terminase small subunit.
 
  
 0.980
SEA15655.1
Phage portal protein, SPP1 family.
 
  
 0.945
SEA15710.1
Phage Mu protein F like protein.
 
     0.814
SEA15776.1
Major capsid protein, N4-gp56 family.
 
     0.713
SEA15540.1
Hypothetical protein.
       0.584
SEA15566.1
Hypothetical protein.
       0.584
SEA05861.1
Hypothetical protein.
 
    0.540
SEA05653.1
Hypothetical protein.
  
  
 0.531
SEA16147.1
Hypothetical protein.
 
     0.475
SEA15738.1
Phage minor structural protein GP20.
       0.460
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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