Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA15776.1Major capsid protein, N4-gp56 family. (337 aa)    
Predicted Functional Partners:
SEA15738.1
Phage minor structural protein GP20.
       0.772
SEA15862.1
Hypothetical protein.
       0.770
SEA15809.1
Hypothetical protein.
       0.747
SEA15837.1
Hypothetical protein.
       0.747
SEA15892.1
Hypothetical protein.
       0.747
SEA15914.1
Hypothetical protein.
       0.747
SEA16067.1
Hypothetical protein.
 
     0.714
SEA15624.1
Phage terminase large subunit.
 
     0.713
SEA15941.1
Hypothetical protein.
       0.698
SEA16147.1
Hypothetical protein.
 
     0.695
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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