Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA12547.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
SEA26371.1
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
  
 0.997
SEA12571.1
PAS domain S-box-containing protein.
 
 0.985
SEA47942.1
NADH-quinone oxidoreductase subunit F.
  
 0.985
SEA47565.1
NADPH-dependent glutamate synthase beta chain.
  
 0.982
SEA54535.1
NADPH-dependent glutamate synthase beta chain.
  
 0.967
SEA58884.1
Putative selenate reductase.
  
 0.963
SEA12599.1
Stage II sporulation protein E (SpoIIE).
 
    0.959
SEA26341.1
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
  
 0.953
SEA80800.1
Ferredoxin hydrogenase large subunit.
 
 0.951
SEA47919.1
4Fe-4S dicluster domain-containing protein.
  
 0.950
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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