Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA14117.1Mn-dependent transcriptional regulator, DtxR family. (124 aa)    
Predicted Functional Partners:
SEA56675.1
Zinc transport system permease protein.
  
 
 0.550
SEA56716.1
Zinc transport system substrate-binding protein.
  
 
 0.538
SEA56695.1
Zinc transport system ATP-binding protein.
  
 
 0.532
SEA79973.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
  
 0.463
SEA13809.1
Ferrous iron transport protein A.
 
  
 0.415
SEA40294.1
Signal peptidase, endoplasmic reticulum-type.
  
    0.412
metN
D-methionine transport system ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.405
SEA47734.1
Tungstate transport system ATP-binding protein.
    
   0.405
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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