Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEA30674.1Penicillin-binding protein 1A. (692 aa)    
Predicted Functional Partners:
SDZ99602.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
0.943
SEA73063.1
Penicillin-binding protein.
 
 
 0.914
SEA24982.1
Penicillin-binding protein 1A.
 
 
0.861
SEA72238.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.801
SEA30646.1
23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.755
SEA09019.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.751
SDZ99704.1
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 
 0.747
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.728
SEA80537.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
   
 0.699
mltG
UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.679
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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