Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA36456.1Protein of unknown function. (223 aa)    
Predicted Functional Partners:
SEA36433.1
VTC domain-containing protein.
 
    0.988
SEA36487.1
Protein of unknown function.
 
     0.952
SEA07750.1
Uncharacterized membrane protein HdeD, DUF308 family.
   
  
 0.534
SEA16483.1
Uncharacterized membrane protein HdeD, DUF308 family.
   
  
 0.534
SEA16536.1
Uncharacterized membrane protein HdeD, DUF308 family.
   
  
 0.534
SEA21126.1
Hypothetical protein.
   
  
 0.534
SEA50592.1
Uncharacterized membrane protein HdeD, DUF308 family.
   
  
 0.534
SEA30587.1
Probable dihydroxyacetone kinase regulator.
  
    0.533
SEA36396.1
Rubrerythrin.
       0.486
SDZ89335.1
Ca2+-transporting ATPase.
  
 
 0.460
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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