Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEA34194.1Selenocysteine lyase/Cysteine desulfurase. (377 aa)    
Predicted Functional Partners:
SEA51760.1
Nitrogen fixation protein NifU.
  
 
 0.837
SEA84318.1
NifU homolog involved in Fe-S cluster formation.
  
 
 0.837
SEA47658.1
Adenylyltransferase and sulfurtransferase.
  
 
 0.811
SEA34175.1
C_GCAxxG_C_C family probable redox protein.
       0.773
SEA34220.1
Hypothetical protein.
       0.773
SEA34243.1
Hypothetical protein.
       0.773
SEA34269.1
Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family.
       0.773
SEA56976.1
Hypothetical protein.
  
 
 0.770
SEA81292.1
NifU homolog involved in Fe-S cluster formation.
  
 
 0.759
SEA56954.1
Iron-regulated ABC transporter ATPase subunit SufC.
  
  
 0.755
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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