Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEA38193.1Gluconolactonase. (299 aa)    
Predicted Functional Partners:
SEA38241.1
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.904
SEA38266.1
L-fucose isomerase.
 
  
  0.902
SEA38293.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
 0.875
SEA38325.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
 
     0.856
SEA38167.1
Uncharacterized conserved protein YgbK, DUF1537 family.
       0.773
SEA38355.1
Creatinine amidohydrolase.
 
     0.708
SEA81253.1
Nicotinamidase-related amidase.
  
 
  0.687
SEA74260.1
Predicted dehydrogenase.
 
 
 0.674
SEA38427.1
C4-dicarboxylate transporter, DctM subunit.
 
     0.622
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
 0.606
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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