Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA39690.1Electron transfer flavoprotein beta subunit. (263 aa)    
Predicted Functional Partners:
SEA39659.1
Electron transfer flavoprotein alpha subunit apoprotein.
 0.994
SEA56055.1
Acyl-CoA dehydrogenase.
 
 0.984
SEA34492.1
Electron transfer flavoprotein alpha subunit apoprotein.
 0.979
SEA18670.1
Electron transfer flavoprotein alpha subunit apoprotein.
 0.975
SEA18367.1
Electron transfer flavoprotein alpha subunit apoprotein.
 0.971
SEA54535.1
NADPH-dependent glutamate synthase beta chain.
   
 0.946
SEA39730.1
Acyl-CoA dehydrogenase.
 
 
 0.923
SEA58884.1
Putative selenate reductase.
  
 0.918
SEA62694.1
2,4-dienoyl-CoA reductase.
  
 0.912
SEA62831.1
2,4-dienoyl-CoA reductase.
  
 0.912
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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