Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA40223.1SipW-cognate class signal peptide. (196 aa)    
Predicted Functional Partners:
SEA40294.1
Signal peptidase, endoplasmic reticulum-type.
 
  
 0.884
SEA40203.1
Hypothetical protein.
 
     0.873
SEA40734.1
Hypothetical protein.
 
     0.803
SEA53414.1
Hypothetical protein.
  
     0.736
SEA71772.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.655
SEA71754.1
EamA-like transporter family protein.
  
     0.629
SEA28895.1
Protein of unknown function.
  
     0.610
SEA71736.1
Hypothetical protein.
  
     0.601
SEA40248.1
Hypothetical protein.
      
0.590
SEA40183.1
Hypothetical protein.
 
     0.564
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.