Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SEA44444.1Transcriptional regulator, DeoR family. (259 aa)    
Predicted Functional Partners:
SEA28718.1
Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.875
SEA28746.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
 
  
 0.834
SDZ90128.1
PTS system, fructose-specific IIC component.
 
  
 0.716
SEA69624.1
Transcriptional regulator, LacI family.
  
   
 0.602
SDZ91688.1
Transcriptional regulator, LacI family.
  
   
 0.537
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.476
araB
L-ribulokinase.
       0.469
SDZ91603.1
Fructokinase; Belongs to the carbohydrate kinase PfkB family.
 
 
 0.431
SEA44488.1
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
     
 0.413
SEA46829.1
GntR family transcriptional regulator.
  
   
 0.403
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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