Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA49574.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
SEA49679.1
Phage portal protein, HK97 family.
  
 
 0.908
SEA49655.1
Hypothetical protein.
     
 0.817
SEA49598.1
Hypothetical protein.
       0.803
SEA49714.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
       0.803
SEA49758.1
Hypothetical protein.
       0.803
SEA49466.1
Hypothetical protein.
       0.803
SEA49493.1
Phage major tail protein, phi13 family.
       0.803
SEA49518.1
Hypothetical protein.
       0.803
SEA49543.1
Hypothetical protein.
       0.803
SEA49628.1
Phage major capsid protein, HK97 family.
       0.788
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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