Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA49366.1Phage minor structural protein, N-terminal region. (348 aa)    
Predicted Functional Partners:
SEA49415.1
Phage-related minor tail protein.
 
   
 0.914
SEA49390.1
Phage-related protein.
  
   0.913
SEA49714.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
     0.823
SEA49679.1
Phage portal protein, HK97 family.
 
  
 0.819
SEA06128.1
Hypothetical protein.
   
 
 0.801
SEA49444.1
Hypothetical protein.
       0.718
SEA49518.1
Hypothetical protein.
 
     0.716
SEA49493.1
Phage major tail protein, phi13 family.
 
     0.710
SEA49466.1
Hypothetical protein.
 
     0.705
SEA49543.1
Hypothetical protein.
 
     0.702
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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