Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA49979.1Chromosome partitioning protein, ParB family; Belongs to the ParB family. (439 aa)    
Predicted Functional Partners:
SDZ93225.1
Chromosome partitioning protein.
 
 
 0.943
SEA35935.1
Chromosome partitioning protein.
 
 
 0.939
SEA50011.1
Hypothetical protein.
 
     0.785
rsmG
16S rRNA m(7)G-527 methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.767
SEA25783.1
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.696
SDZ93201.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
 
   
0.677
SEA70818.1
Protein of unknown function.
    
 
 0.464
SEA50045.1
Hypothetical protein.
       0.431
SEA50075.1
Hypothetical protein.
       0.431
SEA49916.1
Hypothetical protein.
       0.423
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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