Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA53923.1Hypothetical protein. (385 aa)    
Predicted Functional Partners:
SEA53844.1
Energy-coupling factor transport system substrate-specific component.
 
     0.935
SEA53870.1
Voltage-gated potassium channel.
 
     0.818
SEA53897.1
Voltage-gated potassium channel.
       0.737
SEA63301.1
Conserved hypothetical protein.
  
     0.736
SEA71772.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.722
SEA23677.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.679
SEA67354.1
Multidrug transporter EmrE.
  
     0.638
SEA19584.1
Protein of unknown function.
  
     0.619
SEA40734.1
Hypothetical protein.
  
     0.603
SEA35070.1
Hypothetical protein.
  
     0.584
Your Current Organism:
Eubacterium aggregans
NCBI taxonomy Id: 81409
Other names: DSM 12183, E. aggregans, Eubacterium aggregans Mechichi et al. 2000, strain SR12
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